Multi-head CRF classifier for biomedical multi-class named entity recognition on Spanish clinical notes

Database

2024 | journal-article

Towards discovery: an end-to-end system for uncovering novel biomedical relations

Database

2024 | journal-article

Analyzing a Decade of Evolution: Trends in Natural Language Processing

2024 | book-chapter

Analyzing the Impact of COVID-19 on Portuguese Social Media

2024 | book-chapter

SPARe: Supercharged Lexical Retrievers on GPU with Sparse Kernels

2024 | book-chapter

Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target

Journal of Integrative Bioinformatics

2023 | journal-article

DyPrune: Dynamic Pruning Rates for Neural Networks

2023 | book-chapter

Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications

2023 | book-chapter

Modelling patient trajectories using multimodal information

Journal of Biomedical Informatics

2022 | journal-article

The complexity landscape of viral genomes

GigaScience

2022 | journal-article

Chemical identification and indexing in PubMed full-text articles using deep learning and heuristics

Database

2022 | journal-article

Feature-Based Classification of Archaeal Sequences Using Compression-Based Methods

2022 | book-chapter

NAPRT Expression Regulation Mechanisms: Novel Functions Predicted by a Bioinformatics Approach

Genes

2021 | journal-article

BioASQ Synergy: A strong and simple baseline rooted in relevance feedback

CLEF 2021 - Conference and Labs of the Evaluation Forum

2021 | conference-paper

Universal Passage Weighting Mecanism (UPWM) in BioASQ 9b

CLEF 2021 - Conference and Labs of the Evaluation Forum

2021 | conference-paper

A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases

Journal of Biomedical Informatics

2021 | journal-article

Automatic analysis of artistic paintings using information-based measures

Pattern Recognition

2021 | journal-article

Patient Trajectory Modelling in Longitudinal Data: A Review on Existing Solutions

2021 | conference-paper

Benchmarking a transformer-{FREE} model for ad-hoc retrieval

16th Conference of the European Chapter of the Association for Computational Linguistics

2021 | conference-paper

A Recommender System to Help Refining Clinical Research Studies

Studies in Health Technology and Informatics

2021 | book-chapter

Chemical detection and indexing in PubMed full text articles using deep learning and rule-based methods

BioCreative VII Challenge Evaluation Workshop

2021 | conference-paper

Drug Mention Recognition in Twitter Posts Using a Deep Learning Approach

BioCreative VII Challenge Evaluation Workshop

2021 | conference-paper

Leveraging Clinical Notes for Enhancing Decision-Making Systems with Relevant Patient Information

2021 | book-chapter

Extraction of Family History Information From Clinical Notes: Deep Learning and Heuristics Approach

JMIR Medical Informatics

2020 | journal-article

Frugal neural reranking: evaluation on the Covid-19 literature

2020 | conference-paper

BIT.UA at BioASQ 8: Lightweight neural document ranking with zero-shot snippet retrieval

2020 | conference-paper

Extraction of Family History Information From Clinical Notes: Deep Learning and Heuristics Approach (Preprint)

2020 | other

Statistical Complexity Analysis of Turing Machine tapes with Fixed Algorithmic Complexity Using the Best-Order Markov Model

Entropy

2020 | journal-article

Calling Attention to Passages for Biomedical Question Answering

2020 | book-chapter

Clinical concept normalization on medical records using word embeddings and heuristics

Digital Personalized Health and Medicine: Proceedings of the 30th Medical Informatics Europe conference (MIE)

2020 | conference-paper

Evaluating semantic textual similarity in clinical sentences using deep learning and sentence embeddings

Proceedings of the 35th Annual ACM Symposium on Applied Computing

2020 | conference-paper

Frugal neural reranking: evaluation on the Covid-19 literature

Proceedings of the ACL 2020 NLP-COVID Workshop

2020 | conference-paper

Rule-based extraction of family history information from clinical notes

Proceedings of the 35th Annual ACM Symposium on Applied Computing

2020 | conference-paper

Understanding Depression from Psycholinguistic Patterns in Social Media Texts

2020 | book-chapter

Rule-based and Machine Learning Hybrid System for Patient Cohort Selection

2019 | conference-paper

Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation

Database

2019 | journal-article

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine

Database

2019 | journal-article

Configurable web-services for biomedical document annotation

Journal of Cheminformatics

2018 | journal-article

Automated ICD-9-CM medical coding of diabetic patient's clinical reports

Proceedings of the First International Conference on Data Science, E-learning and Information Systems

2018 | conference-paper

Daily cough frequency in tuberculosis and association with household infection

The International Journal of Tuberculosis and Lung Disease

2018 | journal-article

Ejection fraction classification in transthoracic echocardiography using a deep learning approach

2018 IEEE 31st International Symposium on Computer-Based Medical Systems (CBMS)

2018 | conference-paper

Recognition of genetic mutations in text using deep learning

Proceedings of the First International Conference on Data Science, E-learning and Information Systems

2018 | conference-paper

SCREEN-DR: Collaborative platform for diabetic retinopathy

International journal of medical informatics

2018 | journal-article

An Intelligent Cloud Storage Gateway for Medical Imaging

Journal of Medical Systems

2017 | journal-article

Biomedical word sense disambiguation with word embeddings

Advances in Intelligent Systems and Computing

2017 | book

Extracting chemical--protein interactions using long short-term memory networks

Proceedings of the BioCreative VI Workshop

2017 | conference-paper

Identifying relevant literature for precision medicine using deep neural networks

Proceedings of Sixth BioCreative Challenge Workshop

2017 | conference-paper

Improving document prioritization for protein-protein interaction extraction using shallow linguistics and word embeddings

Advances in Intelligent Systems and Computing

2017 | book

Neji: DIY web services for biomedical concept recognition

Proceedings of the BioCreative

2017 | journal-article

Neji: recognition of chemical and gene mentions in patent texts

Proceedings of the Biocreative

2017 | journal-article

Protein-protein interaction article classification using a convolutional recurrent neural network with pre-trained word embeddings

Journal of integrative bioinformatics

2017 | journal-article

Sound: A non-invasive measure of cough intensity

BMJ Open Respiratory Research

2017 | journal-article

Supervised learning and knowledge-based approaches applied to biomedical word sense disambiguation

Journal of integrative bioinformatics

2017 | journal-article

The Objective Assessment of Cough Frequency in Bronchiectasis

Lung

2017 | journal-article

A curation pipeline and web-services for PDF documents

CEUR Workshop Proceedings

2016 | conference-paper

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

Database-the Journal of Biological Databases and Curation

2016 | journal-article

Mining clinical attributes of genomic variants through assisted literature curation in Egas

Database-the Journal of Biological Databases and Curation

2016 | journal-article

Overview of the interactive task in BioCreative V

Database

2016 | journal-article

Semantic knowledge base construction from radiology reports

HEALTHINF 2016 - 9th International Conference on Health Informatics, Proceedings; Part of 9th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2016

2016 | conference-paper

A document processing pipeline for annotating chemical entities in scientific documents.

Journal of cheminformatics

2015 | journal-article

A semantic layer for unifying and exploring biomedical document curation results

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

2015 | book

An Overview of Biomolecular Event Extraction from Scientific Documents

Computational and Mathematical Methods in Medicine

2015 | journal-article

Ann2RDF: Moving annotations to semantic web

17th International Conference on Information Integration and Web-Based Applications and Services, iiWAS 2015 - Proceedings

2015 | conference-paper

Incremental learning versus batch learning for classification of user's behaviour in medical imaging

HEALTHINF 2015 - 8th International Conference on Health Informatics, Proceedings; Part of 8th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2015

2015 | conference-paper

Long-term prefetching for cloud medical imaging repositories.

Studies in health technology and informatics

2015 | journal-article

Pattern recognition for cache management in distributed medical imaging environments

International Journal of Computer Assisted Radiology and Surgery

2015 | journal-article

The CHEMDNER corpus of chemicals and drugs and its annotation principles.

Journal of cheminformatics

2015 | journal-article

Analysing Twitter and web queries for flu trend prediction

Theoretical Biology and Medical Modelling

2014 | journal-article

Computational prediction of the human-microbial oral interactome

BMC Systems Biology

2014 | journal-article

Egas: a collaborative and interactive document curation platform.

Database : the journal of biological databases and curation

2014 | journal-article

Extracting sentences describing biomolecular events from the biomedical literature

Advances in Intelligent Systems and Computing

2014 | book

TrigNER: Automatically optimized biomedical event trigger recognition on scientific documents

Source Code for Biology and Medicine

2014 | journal-article

Twitter: A good place to detect health conditions

PLoS ONE

2014 | journal-article

A longitudinal assessment of acute cough

American Journal of Respiratory and Critical Care Medicine

2013 | journal-article

A modular framework for biomedical concept recognition

BMC Bioinformatics

2013 | journal-article

Analysing Relevant Diseases from Iberian Tweets

Advances in Intelligent Systems and Computing

2013 | journal-article

BeCAS: Biomedical concept recognition services and visualization

Bioinformatics

2013 | journal-article

Cough frequency in health and disease

European Respiratory Journal

2013 | journal-article

Gimli: Open source and high-performance biomedical name recognition

BMC Bioinformatics

2013 | journal-article

Predicting Flu Incidence from Portuguese Tweets

Proceedings Iwbbio 2013: International Work-Conference on Bioinformatics and Biomedical Engineering

2013 | journal-article

Predicting Flu Incidence from Portuguese Tweets

Proceedings Iwbbio 2013: International Work-Conference on Bioinformatics and Biomedical Engineering

2013 | journal-article

Structuring and exploring the biomedical literature using latent semantics

Advances in Intelligent Systems and Computing

2013 | journal-article

Four-hour cough frequency monitoring in chronic cough

Chest

2012 | journal-article

Harmonization of gene/protein annotations: Towards a gold standard medline

Bioinformatics

2012 | journal-article

ACUTE COUGH: A LONGITUDINAL OBSERVATIONAL STUDY

Thorax

2011 | journal-article

Classification methods for finding articles describing protein-protein interactions in PubMed.

Journal of integrative bioinformatics

2011 | journal-article

PREDICTORS OF 24-H COUGH FREQUENCY IN ACUTE COUGH

Thorax

2011 | journal-article

Prioritizing literature search results using a training set of classified documents

Advances in Intelligent and Soft Computing

2011 | journal-article

The Protein-Protein Interaction tasks of BioCreative III: Classification/ranking of articles and linking bio-ontology concepts to full text

BMC Bioinformatics

2011 | journal-article

The gene normalization task in BioCreative III

BMC Bioinformatics

2011 | journal-article

4 H COUGH FREQUENCY MONITORING WITH THE LEICESTER COUGH MONITOR

Thorax

2010 | journal-article

Concept-based query expansion for retrieving gene related publications from MEDLINE

BMC Bioinformatics

2010 | journal-article

Expanding Gene-Based PubMed Queries

Advances in Bioinformatics

2010 | book-chapter

Improving Cross Mapping in Biomedical Databases

Advances in Bioinformatics

2010 | book-chapter

Long-term low-dose erythromycin in patients with unexplained chronic cough: A double-blind placebo controlled trial

Thorax

2010 | journal-article

Recognition of gene/protein names using conditional random fields

KDIR 2010 - Proceedings of the International Conference on Knowledge Discovery and Information Retrieval

2010 | journal-article

FACTORS AFFECTING COUGH FREQUENCY IN A MIXED POPULATION

Thorax

2009 | journal-article

Syntactic parsing for bio-molecular event detection from scientific literature

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

2009 | journal-article

The Leicester cough monitor: A semi-automated, semi-validated cough detection system? (European Respiratory Journal (2008) 32, (530-531))

European Respiratory Journal

2009 | journal-article

From the authors

European Respiratory Journal

2008 | journal-article

The Leicester Cough Monitor: Preliminary validation of an automated cough detection system in chronic cough

European Respiratory Journal

2008 | journal-article

An automated system for 24-h monitoring of cough frequency: The Leicester cough monitor

IEEE Transactions on Biomedical Engineering

2007 | journal-article

Obstructive sleep apnoea: A cause of chronic cough

Cough

2007 | journal-article

Cough frequency, cough sensitivity and health status in patients with chronic cough

Respiratory Medicine

2006 | journal-article

Detection of cough signals in continuous audio recordings using hidden Markov models

IEEE Transactions on Biomedical Engineering

2006 | journal-article

Training neural networks and neuro-fuzzy systems: A unified view

IFAC Proceedings Volumes (IFAC-PapersOnline)

2002 | conference-paper

Neural network classification of cerebral embolic signals

Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings

2001 | journal-article